GgaEX7011863 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:76656-79020:-
Coord C1 exon
chrLGE22C19W28_E50C23:78916-79020
Coord A exon
chrLGE22C19W28_E50C23:78099-78369
Coord C2 exon
chrLGE22C19W28_E50C23:76656-77601
Length
271 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCTCCTGTTGCACAGAAC
3' ss Score
7.35
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTGGAGGTCAAGATATTTTCATGACAGAAGAACAAAAGAAATACTACAATGCCATGAAAAAACTGGGCTCCAAGAAGCCTCAAAAGCCAATTCCCCGGCCTCTG
Seq A exon
AACCGCATTCAGGGAGCTGTCTTTGACTTTGTCACTCAGCAAGCATTCGACATCGTCATCATGATGCTCATCTGCCTCAACATGGTGACCATGATGGTGGAGACGGACACACAGAGCAAGCAGATGGAGGACATCCTCTACTGGATCAACCTGGTGTTCGTCATCTTCTTCACCTGCGAGTGTGTGCTGAAGATGTTCGCCTTGCGGCACTACTACTTCACCATTGGGTGGAACATCTTTGACTTCGTTGTTGTGATTCTGTCCATTGTGG
Seq C2 exon
GAATGTTCCTGGCTGAAATCATCGAGAAGTATTTTGTATCCCCCACTCTCTTCCGAGTCATCCGCCTGGCTCGTATTGGACGTATCCTGCGTTTGATCAAAGGAGCCAAAGGGATCCGCACCTTGCTTTTTGCCTTAATGATGTCTTTGCCTGCCTTGTTCAACATCGGCCTCTTGCTGTTCCTGGTCATGTTCATCTTCTCCATCTTCGGCATGTCCAACTTTGCCTACGTCAAGCATGAGGCTGGCATCGATGACATGTTCAACTTTGAGACCTTTGGCAACAGCATGATCTGCTTGTTCCAGATCACGACGTCGGCCGGCTGGGATGGCCTCCTGCTGCCCATCCTAAACCGGCCTCCAGACTGCGACCTGGACAAGGAGCATCCCGGGAGCGGCTTTAAGGGGGACTGCGGGAACCCCTCAGTGGGGATATTTTTCTTTGTGAGCTACATCATCATCTCCTTCCTGATCGTGGTCAACATGTACATCGCCATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'35-32,'35-30,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGGCTCCAAGAAGCC
R:
AACATGTCATCGATGCCAGCC
Band lengths:
308-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]