GgaEX1016989 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9339498-9339876:+
Coord C1 exon
chr12:9339498-9339533
Coord A exon
chr12:9339641-9339721
Coord C2 exon
chr12:9339808-9339876
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCCACTTTCACACTCTACAGGGG
3' ss Score
8.1
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GGCCCACCGGGTGCACCTGGGCTGCCAGGACAAGTG
Seq A exon
GGGGAGAGTGGCAAACCAGGTGTGCCTGGGCGGGATGGTGTGCCGGGGAAGGACGGCGAACCAGGGATGCCTGGGAAGTTG
Seq C2 exon
GGCGTACCAGGACCATCAGGCCCTACCGGCCCCAAAGGGGAGCCAGGGGATGCAGGAGCACCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'74-79,'74-78,75-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.9=100)
A:
PF0139113=Collagen=PD(31.6=92.6),PF0139113=Collagen=PU(35.9=85.2)
C2:
PF0139113=Collagen=PU(41.2=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTGCCAGGACAAGT
R:
TGCTCCTGCATCCCCTGG
Band lengths:
79-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]