BtaEX6095650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51880985-51881382:+
Coord C1 exon
chr22:51880985-51881020
Coord A exon
chr22:51881100-51881180
Coord C2 exon
chr22:51881314-51881382
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACAGAGCTCTTCCCTCTCAGGGG
3' ss Score
5.65
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
Exon sequences
Seq C1 exon
GGTCCTCAAGGGGCACCGGGTTTGCCTGGACAAGTG
Seq A exon
GGGGAGACGGGAAAGCCGGGAGCGCCAGGTCGTGATGGTGCCACTGGGAAAGATGGAGACAGAGGAGCCCCCGGTGTGCCG
Seq C2 exon
GGGTCACCAGGTCTGCCAGGCCCTGTCGGACCTAAAGGAGAGCCGGGACCCATGGGGACCCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'88-91,'88-90,89-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.3=100)
A:
PF0139113=Collagen=PD(33.3=88.9),PF0139113=Collagen=PU(30.8=74.1)
C2:
PF0139113=Collagen=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTTTGCCTGGACAAGTG
R:
GGGTCCCGGCTCTCCTTTAG
Band lengths:
71-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]