DreEX6023299 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40215739-40218443:-
Coord C1 exon
chr6:40218408-40218443
Coord A exon
chr6:40215963-40216043
Coord C2 exon
chr6:40215739-40215807
Length
81 bp
Sequences
Splice sites
3' ss Seq
TAACATGATTTGATAAACAGGGA
3' ss Score
4.41
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGACCACAAGGACCTCAAGGGCTTCCAGGACAAGTG
Seq A exon
GGAGAGGGGGGCAAGCCTGGGGTCCCAGGAAGAGACGGTGCTCCGGGTAAAGATGGCCTGCCAGGCTTAAATGGTAAACAG
Seq C2 exon
GGTATTGCAGGACCGGTCGGTCCCCAAGGACTTAAAGGAGAGCAAGGAGACAGCGGTCCTCCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'93-95,'93-94,94-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.1=100),PF0139113=Collagen=PU(13.8=91.7)
A:
PF0139113=Collagen=PD(34.5=74.1),PF0139113=Collagen=PU(27.9=63.0)
C2:
PF0139113=Collagen=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCACAAGGACCTCAAGGG
R:
CTTTCCTGGAGGACCGCTGTC
Band lengths:
105-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]