RnoEX6037752 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117716878-117717270:+
Coord C1 exon
chr8:117716878-117716913
Coord A exon
chr8:117716993-117717073
Coord C2 exon
chr8:117717202-117717270
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTCTCTTCTTTTCAGGGG
3' ss Score
8.23
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GGCCCACAAGGCTCACCAGGTTTGCCCGGACAAGTG
Seq A exon
GGGGAGACAGGGAAGCCAGGACCCCCAGGCCGGGATGGTAGCAGCGGAAAGGACGGAGAAAGAGGAGGCCCTGGCGTGCCA
Seq C2 exon
GGGTTACCAGGTCTGCCCGGCCCTGTTGGACCTAAAGGAGAACCTGGACCTGTGGGGGCCCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'92-89,'92-88,93-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.3=100)
A:
PF0139113=Collagen=PD(33.3=88.9),PF0139113=Collagen=PU(30.8=74.1)
C2:
PF0139113=Collagen=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGGCTCACCAGGTTTG
R:
CCACAGGTCCAGGTTCTCCTT
Band lengths:
88-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]