MmuEX6069076 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108877255-108877646:+
Coord C1 exon
chr9:108877255-108877290
Coord A exon
chr9:108877371-108877451
Coord C2 exon
chr9:108877578-108877646
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTGAGCCCCTTCTTTTCAGGGG
3' ss Score
7.33
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
GGTCCACAAGGCTCTCCAGGTTTGCCCGGACAAGTG
Seq A exon
GGGGAGACAGGGAAGCCAGGACCTCCAGGCCGTGACGGTAGCAGTGGAAAGGACGGAGATCGGGGAAGTCCTGGTGTGCCG
Seq C2 exon
GGGTCACCAGGTCTGCCCGGCCCTGTTGGACCTAAAGGAGAACCTGGGCCTGTGGGGGCTCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'89-94,'89-92,90-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.3=100)
A:
PF0139113=Collagen=PD(33.3=88.9),PF0139113=Collagen=PU(33.8=85.2)
C2:
PF0139113=Collagen=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAAGGCTCTCCAGGTTT
R:
CTGTCCAGGAGCCCCCAC
Band lengths:
103-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: