GgaEX1051715 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1782987-1783588:-
Coord C1 exon
chr25:1783471-1783588
Coord A exon
chr25:1783276-1783390
Coord C2 exon
chr25:1782987-1783044
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCCGCCCCCCGCAGCCA
3' ss Score
11.15
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATGCCGCCCCGCGCTGCCGCCGCCCCCCCTCTCCCCCTCCTCGTCCTCGTGGGTCCCGCAGCGCTGGCGCTGTCCTTCCCGCGGGACCTCGAGCCGCGCAGCGCCGTGGGGCTGTCAG
Seq A exon
CCACCGCCTCCTATCCGCGCTTCGGGGGTCTCCGCGGGGACAACGGCAGCGCGGAGTTCGGCATCGGCTTCCAGCGAATGCTGCGCCTCAACGGGACGCTGCTGGTGGCCGCGCG
Seq C2 exon
GGACCACCTCTACGCCTTCGCTCTGGGGGGGGACCCGACAGCGCTGTACCCCCATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.6=38.5)
C2:
PF0140314=Sema=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCCCTCCTCGTCCTC
R:
GATGGGGGTACAGCGCTGTC
Band lengths:
146-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]