BtaEX6038933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20788720-20790872:+
Coord C1 exon
chr7:20788720-20788869
Coord A exon
chr7:20788977-20789100
Coord C2 exon
chr7:20790812-20790872
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGCCCTCCTCCAGACC
3' ss Score
11.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTTACCTCCTGTCGCCCTGACCTCGCCATGCGGACCCCGCGAGGGCCCCCTTCCCGTCCGGCCCTACTGCTCCTGCTGCTGCTCCTGGGAGGCGCCCACGGCCTCTTCCCCGAGGAGCCGCCGCCGCTCAGCGTGGCCCCGAGGGACT
Seq A exon
ACCTGAATCACTATCCCGTGTTCGTGGGCAGTGGGCCAGGACGCCTGACCCCCTCAGAAGACGCTGATGACCTCAACATCCAGCGAGTTCTACGGGTCAATAGAACGCTGTTCATCGGGGGCAG
Seq C2 exon
GGACAACCTGTACCGGGTGGAGCTGGAGCCCCCCACATCAACGGAAATGCGGTACCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.179 C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACCTCCTGTCGCCCTG
R:
CCGCTGGTACCGCATTTCC
Band lengths:
210-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]