RnoEX6038631 @ rn6
Exon Skipping
Gene
ENSRNOG00000045998 | Sema6b
Description
semaphorin 6B [Source:RGD Symbol;Acc:69278]
Coordinates
chr9:10941613-10942969:+
Coord C1 exon
chr9:10941613-10941948
Coord A exon
chr9:10942052-10942175
Coord C2 exon
chr9:10942909-10942969
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCCTCCACTCCCTCCCCTAGACC
3' ss Score
10.22
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ATTTCCTGAGAATTTTATGCACATGTGGTCTTAAAGTCGCTTGTTAATTAAACAACCTCTGAGCGTCATTATTATTATCAATGTTATTATTTTTATTCTGGAGGAAGAGAGGGACTCGCGCGCCCCCTAATGGCCTCTTATGGAACTGCAGGAAGCTCCACTCACTGGCCTTCTGGCTTGTAGGTGTTACCTGTGGTCACCTGGTCCTCACCATGTGGACCCCGCGAGCGCCCCCTCCACGCCCGGCCCTGCTGTTCCTCCTGCTGTTGCTTCTGAGGGTCACCCATGGCCTTTTCCCAGATGAACCACCTCCACTCAGTGTGGCTCCCAGGGACT
Seq A exon
ACCTGAGCCACTACCCCGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCCCTGCAGAGGGTGCTGAGGACCTCAACATCCAGAGAGTGCTACGTGTTAACAGGACACTGTTCATCGGGGACAG
Seq C2 exon
AGACAACCTGTACCAAGTAGAACTGGAGCCATCCACATCCACGGAGCTGCGGTATCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045998-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.083 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCAGGAAGCTCCACTC
R:
CAGCTCCGTGGATGTGGATG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]