DreEX6029195 @ danRer10
Exon Skipping
Gene
ENSDARG00000036626 | sema6ba
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:ZFIN;Acc:ZDB-GENE-131024-1]
Coordinates
chr2:49498329-49515514:+
Coord C1 exon
chr2:49498329-49498452
Coord A exon
chr2:49512044-49512158
Coord C2 exon
chr2:49515454-49515514
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGGATTTCTGTGTTTTTCAGTGG
3' ss Score
8.65
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTGGTGTGTCGCTGCCATGGCGACTCTGACCCCCTGCCTCTTACAGATCTTTGCTGTGCTCCAATTGGCTGCCTGCTCGTTTCCAGAGGAACCTGAGCCTTTAATCTCCGCCCCCGCTGAGG
Seq A exon
TGGTGAGACGGTATCCGGTGTTTTTGGGCCGAGCGCATCGCTCTTACACCCGTCAGGAGCCGCTTTACATTCAGACCGTCCTCAGAGTCAACCGTACACTTTACATTGGAGCCAG
Seq C2 exon
AGATGACCTTTATCGAGTGGAATTGGACCATGTATCTGGAGATGAAATGTTCTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036626-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.8=41.0)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTGTCGCTGCCATG
R:
TGCTGTAGAACATTTCATCTCCAGA
Band lengths:
181-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]