GgaEX6027915 @ galGal3
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
NA
Coordinates
chr28:2063239-2064018:-
Coord C1 exon
chr28:2063916-2064018
Coord A exon
chr28:2063635-2063764
Coord C2 exon
chr28:2063239-2063299
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTGTTGTCCCCAGATG
3' ss Score
12.92
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATGTGGCCCCCCCTCGTCCTGCTGCTCCTGCTCGCAGCGGAGAGGACGGCTCACGGCACCTTCCCCGAGGAGCCCAACCCCATCGCCGTGGCAAACGAGGACT
Seq A exon
ATGTGAAGCACTACGCCGTGTTCGTGGGCCATGGCAGCAGCCGGCCGGGCGGCCCCGAGGGCGGTGGCACCGAGCGCCTCAACATCCAGCGCATCCTCAAGGTCAACCGGACCCTCTTTGTTGGAGACAG
Seq C2 exon
GGACAACGTCTACCGTGTGAGCCTGGAGCCCACTGCTGGCAGTGAGATGCGCTATCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.205 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.8=36.4)
C2:
PF0140314=Sema=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCGTCCTGCTGCTC
R:
CGGTGATAGCGCATCTCACTG
Band lengths:
154-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]