DreEX6049257 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:19004848-19021478:-
Coord C1 exon
chr8:19021355-19021478
Coord A exon
chr8:19017801-19017915
Coord C2 exon
chr8:19004848-19004908
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTTTGTTCCTTAGTGG
3' ss Score
8.42
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGCCGGGGCTCTGCTACTATGATGACCGTGGCCAAACCTTTCATCAGGCTCTTCTGGCTTCTGCGGCTGGTGTGTGCGGTTTTCCCTGAAGAACCGGGACCTCTGAACTTCGTCCGCACTGACG
Seq A exon
TGGTAAGAAAGTATCCTGTGTTTCTTGGACGACCCCATCACTCAACCCTCAGACATGAACCCTTACACATACAGAGGATCCTGCAGGTCAACCGTACCCTTTACATCGGAGCCAG
Seq C2 exon
AGATGACCTTTTCCGAGTGGAGCTGGACAACGTGGTGGGAGAAGAGATGTTTTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'2-9,'2-8,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.8=41.0)
C2:
PF0140314=Sema=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGCTCTGCTACTATGAT
R:
TGCTGTAAAACATCTCTTCTCCCAC
Band lengths:
181-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]