MmuEX6078489 @ mm10
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56131743-56132868:-
Coord C1 exon
chr17:56132716-56132868
Coord A exon
chr17:56132498-56132621
Coord C2 exon
chr17:56131743-56131803
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTTCCACTCCCTCCCTTAGACT
3' ss Score
9.1
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTGTCATCTGTGGTCATCCGGTCCTCACCATGTGGACCCCGCGAGTGCCCCCTCCACGCCCGGCCCTGTCGTTTTTCCTGCTGTTGCTCCTGGGGGTCACCTATGGCCTTTTCCCAGAAGAACCACCTCCACTCAGCGTGGCTCCCAGGGACT
Seq A exon
ACTTGAGCCACTATCCCGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCGCTGCGGAGGGTGCTGAGGACCTCAACATCCAGAGAGTGCTACGTGTTAACAGGACACTGTTCATTGGGGACAG
Seq C2 exon
AGATAACCTGTACCAAGTAGAACTGGAGCCATCCACTTCCACGGAGCTGCGATATCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'9-4,'9-3,10-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCTGTGGTCATCCGGT
R:
CTCTGATATCGCAGCTCCGTG
Band lengths:
212-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types