MmuEX6078489 @ mm9
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56271166-56272291:-
Coord C1 exon
chr17:56272139-56272291
Coord A exon
chr17:56271921-56272044
Coord C2 exon
chr17:56271166-56271226
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTTCCACTCCCTCCCTTAGACT
3' ss Score
9.1
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTGTCATCTGTGGTCATCCGGTCCTCACCATGTGGACCCCGCGAGTGCCCCCTCCACGCCCGGCCCTGTCGTTTTTCCTGCTGTTGCTCCTGGGGGTCACCTATGGCCTTTTCCCAGAAGAACCACCTCCACTCAGCGTGGCTCCCAGGGACT
Seq A exon
ACTTGAGCCACTATCCCGTGTTCGTGGGCAGCGGGCCTGGTCGTCTGACCGCTGCGGAGGGTGCTGAGGACCTCAACATCCAGAGAGTGCTACGTGTTAACAGGACACTGTTCATTGGGGACAG
Seq C2 exon
AGATAACCTGTACCAAGTAGAACTGGAGCCATCCACTTCCACGGAGCTGCGATATCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCTGTGGTCATCCGGT
R:
CTCTGATATCGCAGCTCCGTG
Band lengths:
212-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: