HsaEX6092041 @ hg19
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:10739]
Coordinates
chr19:4557175-4558507:-
Coord C1 exon
chr19:4558349-4558507
Coord A exon
chr19:4558038-4558161
Coord C2 exon
chr19:4557175-4557235
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTCCACCCCCTCACTCAGACC
3' ss Score
6.32
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CCGCAGGCGTCACCTCCTCCTGTCGCCTGGCCCTCGCCATGCAGACCCCGCGAGCGTCCCCTCCCCGCCCGGCCCTGCTGCTTCTGCTGCTGCTACTGGGGGGCGCCCACGGCCTCTTTCCTGAGGAGCCGCCGCCGCTTAGCGTGGCCCCCAGGGACT
Seq A exon
ACCTGAACCACTATCCCGTGTTTGTGGGCAGCGGGCCCGGACGCCTGACCCCCGCAGAAGGTGCTGACGACCTCAACATCCAGCGAGTCCTGCGGGTCAACAGGACGCTGTTCATTGGGGACAG
Seq C2 exon
GGACAACCTCTACCGCGTAGAGCTGGAGCCCCCCACGTCCACGGAGCTGCGGTACCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.048 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCACCTCCTCCTGT
R:
CCTCTGGTACCGCAGCTCC
Band lengths:
215-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)