GgaEX6027915 @ galGal4
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr28:2501834-2502634:-
Coord C1 exon
chr28:2502511-2502634
Coord A exon
chr28:2502230-2502359
Coord C2 exon
chr28:2501834-2501894
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTGTTGTCCCCAGATG
3' ss Score
12.92
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CTGCCTGCACCAGGGGAGACAATGTGGCCCCCCCTCGTCCTGCTGCTCCTGCTCGCAGCGGAGAGGACGGCTCACGGCACCTTCCCCGAGGAGCCCAACCCCATCGCCGTGGCAAACGAGGACT
Seq A exon
ATGTGAAGCACTACGCCGTGTTCGTGGGCCATGGCAGCAGCCGGCCGGGCGGCCCCGAGGGCGGTGGCACCGAGCGCCTCAACATCCAGCGCATCCTCAAGGTCAACCGGACCCTCTTTGTTGGAGACAG
Seq C2 exon
GGACAACGTCTACCGTGTGAGCCTGGAGCCCACTGCTGGCAGTGAGATGCGCTATCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.330 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(25.8=36.4)
C2:
PF0140314=Sema=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGGGGAGACAATGTG
R:
CGGTGATAGCGCATCTCACTG
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]