HsaEX6092041 @ hg38
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
semaphorin 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr19:4557163-4558489:-
Coord C1 exon
chr19:4558337-4558489
Coord A exon
chr19:4558026-4558149
Coord C2 exon
chr19:4557163-4557223
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTCCACCCCCTCACTCAGACC
3' ss Score
6.32
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCGTCACCTCCTCCTGTCGCCTGGCCCTCGCCATGCAGACCCCGCGAGCGTCCCCTCCCCGCCCGGCCCTGCTGCTTCTGCTGCTGCTACTGGGGGGCGCCCACGGCCTCTTTCCTGAGGAGCCGCCGCCGCTTAGCGTGGCCCCCAGGGACT
Seq A exon
ACCTGAACCACTATCCCGTGTTTGTGGGCAGCGGGCCCGGACGCCTGACCCCCGCAGAAGGTGCTGACGACCTCAACATCCAGCGAGTCCTGCGGGTCAACAGGACGCTGTTCATTGGGGACAG
Seq C2 exon
GGACAACCTCTACCGCGTAGAGCTGGAGCCCCCCACGTCCACGGAGCTGCGGTACCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'2-6,'2-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.048 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=40.5)
C2:
PF0140314=Sema=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTCCTCCTGTCGCC
R:
CCTCTGGTACCGCAGCTCC
Band lengths:
212-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains