DreEX0065164 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30253437-30265678:+
Coord C1 exon
chr16:30253437-30253633
Coord A exon
chr16:30263676-30263790
Coord C2 exon
chr16:30265621-30265678
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCGCCACCGTGAAGACA
3' ss Score
1.29
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTGGTCTTCAGTCTACTCTGGGTCATGCTGTGTGGCTGAATTCTATGCTGTAGCTGAAATGAGGTTGGTGATTTTGGGGTCGCGGCCCCTTTTGGCCTTGACCCTCATGCTCACCCTCACCTGCCTAAAGCATCTGTGCCATGGTGCAACACCCTTTCCTCAGGATCTGGAACCCATCAGGACCGTTGGTAGTGAAC
Seq A exon
ACACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACCGCCAGACTGGGCCTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATCGCTGCAAG
Seq C2 exon
AGATCACGTTTTTGCCATTAACCTCAGTGCTTCATTGGAGCGCATCGTCCCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.6=38.5)
C2:
PF0140314=Sema=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTTCAGTCTACTCTGGGT
R:
GATGCGCTCCAATGAAGCACT
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]