HsaEX6033451 @ hg19
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:10740]
Coordinates
chr1:151112114-151115151:-
Coord C1 exon
chr1:151114980-151115151
Coord A exon
chr1:151112452-151112566
Coord C2 exon
chr1:151112114-151112177
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATCTCTCTGTGTCCTCAAGGTA
3' ss Score
8.2
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGCCGGCTTATGGGTGAGGGGGCACCCCCTGGGGCCTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGGCCGCCTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAG
Seq A exon
GTACTTCCCCATTATCCTGGTTTCGGGGCCTGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTAGTGGCTGCCCG
Seq C2 exon
GGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGGGGCTGGTGCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(11.7=35.9)
C2:
PF0140314=Sema=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGCTTATGGGTGAGG
R:
ACCAGCCCCTCCCCTTCTT
Band lengths:
226-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)