RnoEX0079402 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196334626-196338053:+
Coord C1 exon
chr2:196334626-196334779
Coord A exon
chr2:196337391-196337505
Coord C2 exon
chr2:196337997-196338053
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTACACCGCTGCACCTCCAGGTA
3' ss Score
6.51
5' ss Seq
CCGGTAAAA
5' ss Score
6
Exon sequences
Seq C1 exon
GAGGGGGTACTCCCTGGGGCTTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTCCATGCCCTTGCTGCTGCTGTTGCTGCTGTCACTCCCCCAAGCCCAGACTGCCTTTCCCCAGGACCCCATCCCTCTGTTGACCTCTGACCTACAAG
Seq A exon
GTACCTCTCCGTCATCCTGGTTCCGGGGCCTGGAGGACGATGCTGTGGCTGCGGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTTGTGGCTGCCCG
Seq C2 exon
TTTCTGACATGGCGGAGCCAAGACATGGAGAATTGTGCTGTCCGGGGAAAGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_MULTIEX2-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(11.1=35.9)
C2:
PF0140314=Sema=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTCCCTGGGGCTTGAG
R:
GTCAGCTTTCCCCGGACAG
Band lengths:
205-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]