DreEX6071238 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:406581-408401:+
Coord C1 exon
chr19:406581-406710
Coord A exon
chr19:407607-407721
Coord C2 exon
chr19:408344-408401
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTTTCTCTGCAGACT
3' ss Score
11.29
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TTGACGGAAAGAACATGGTGTTGCTCTGTCATCATGGCGATGGTCTTATTAGCCTGGCTCCTCCCACTCATTACTTCTGCCACGCCTTTTCCTAGAGATCTGCAGCCAATTAGTGTGGTGGGATTGGACG
Seq A exon
ACTCGTACCTGTACCCCAGTTTTCAGGGTCTGGTGTCCAGCAATGAGACGGAGCGTCTGGGTCTGGACTATCAGCGCATGATGAGGATCCAGCACATGCTGTACATCGCCGCCAG
Seq C2 exon
AGACCATGTGTTTGTTGTAAATCTCACAACGGCAGTAGATGAAATTATTCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=43.6)
C2:
PF0140314=Sema=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGGAAAGAACATGGTGT
R:
GCTGTGGAATAATTTCATCTACTGCC
Band lengths:
186-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]