BtaEX6015101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19719483-19721743:+
Coord C1 exon
chr3:19719483-19719651
Coord A exon
chr3:19721267-19721381
Coord C2 exon
chr3:19721680-19721743
Length
115 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCTGTGCCTTCTAGGTA
3' ss Score
10.31
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGCCAGCATATGGGTGAGGGGGCAGCCCCTGGGGCCTGAGCTGCCCCACACAGAATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTACTCTTGCTCTCAATTCCACACACGCAGGCTGCATTTCCCCAGGACCCTCTCCCTCTGCTGACCTCTGACCTGCACG
Seq A exon
GTATCTCTCCATTATCCTGGTTCCGGGGCCTGGAGGATGATGCTGTGGTTGCGGAACTTGGGCTGGACTTTCAGAGATTCCTGACCCTGAACCGGACCTTGTTAGTGGCTGCCAG
Seq C2 exon
GGATCACGTTTTCTCCTTTGATCTTCAAGCCCAAGAAGAAGGGGAGAGGCTCATGCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.3=35.9)
C2:
PF0140314=Sema=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATATGGGTGAGGGGGC
R:
TGAGCCTCTCCCCTTCTTCTT
Band lengths:
218-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]