GgaEX6018322 @ galGal3
Exon Skipping
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5501340-5514606:+
Coord C1 exon
chr2:5501340-5501464
Coord A exon
chr2:5510554-5510708
Coord C2 exon
chr2:5514433-5514606
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTGTTCCTTTTCAGTTT
3' ss Score
10.63
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAAGCTTGATGAAATCAGTCTTTCTGAAGGCAGCACAGTGGATTTGACAAATCCTGCAGAACTGCTGGAGCAGATCCCTGAGTTTGCTGAGGAGCTGATGGAGCCTGAAGATTGCTTCCCCGAAG
Seq A exon
TTTGTGTGCGGTTCTTCCCATGCTGTTCCGTGGACATCTCAAAATTTCCAGGCAAAATTTGGTGGAGGCTCCGGAAGACTTGCTACAGGATTGTTGAACACAACTGGTTTGAGACTTTCATCATATTCATGATCTTGCTGAGCAGTGGAGCCCTG
Seq C2 exon
GCTTTTGAAGATATTTACCTTGAAGATCGAAAAAACATAAAAACCATGCTGGAATATGCTGACAAAATATTCACTTACATCTTTGTATTGGAAATGCTCCTGAAATGGGTGGCTTATGGCTTCAAGAAGTATTTCACCAACGCCTGGTGCTGGCTTGACTTCCTCATTGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(15.6=100)
A:
PF065128=Na_trans_assoc=PD(20.6=84.6)
C2:
PF0052026=Ion_trans=PU(17.0=67.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGAAGGCAGCACAGTGG
R:
CCAGGCGTTGGTGAAATACTTCT
Band lengths:
252-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]