GgaEX6018322 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5565162-5578424:+
Coord C1 exon
chr2:5565162-5565282
Coord A exon
chr2:5574372-5574526
Coord C2 exon
chr2:5578251-5578424
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTGTTCCTTTTCAGTTT
3' ss Score
10.63
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTTGATGAAATCAGTCTTTCTGAAGGCAGCACAGTGGATTTGACAAATCCTGCAGAACTGCTGGAGCAGATCCCTGAGTTTGCTGAGGAGCTGATGGAGCCTGAAGATTGCTTCCCCGAAG
Seq A exon
TTTGTGTGCGGTTCTTCCCATGCTGTTCCGTGGACATCTCAAAATTTCCAGGCAAAATTTGGTGGAGGCTCCGGAAGACTTGCTACAGGATTGTTGAACACAACTGGTTTGAGACTTTCATCATATTCATGATCTTGCTGAGCAGTGGAGCCCTG
Seq C2 exon
GCTTTTGAAGATATTTACCTTGAAGATCGAAAAAACATAAAAACCATGCTGGAATATGCTGACAAAATATTCACTTACATCTTTGTATTGGAAATGCTCCTGAAATGGGTGGCTTATGGCTTCAAGAAGTATTTCACCAACGCCTGGTGCTGGCTTGACTTCCTCATTGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(14.9=100)
A:
PF065128=Na_trans_assoc=PD(16.4=84.6)
C2:
PF0052026=Ion_trans=PU(17.0=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGAAGGCAGCACAGTGG
R:
CCAGGCGTTGGTGAAATACTTCT
Band lengths:
252-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]