RnoEX0078583 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128196253-128198613:-
Coord C1 exon
chr8:128198493-128198613
Coord A exon
chr8:128197717-128197871
Coord C2 exon
chr8:128196253-128196353
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGTCGCCCTTCCCTCACAGGCT
3' ss Score
11.01
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
ACCCCTGAGGACAGTTACTCCGAGGGCAGCACAGCTGACATGACCAACACCGCCGACCTCCTGGAGCAAATCCCAGACCTTGGTGAGGACGTCAAGGACCCAGAGGACTGCTTTACTGAAG
Seq A exon
GCTGCGTCCGACGCTGTCCCTGCTGCATGGTAGACACAACCCAGTCCCCAGGGAAGGTCTGGTGGCGATTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACTTTCATCATCTTCATGATCCTGCTCAGCAGTGGAGCGCTG
Seq C2 exon
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAAAGAGGAAGTGTGGAAAACAGAAAATTATATAGCCAGGCAAGATCAAGCATATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'28-30,'28-29,29-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(15.3=100)
A:
PF065128=Na_trans_assoc=PD(16.8=84.6)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGAGGACAGTTACTCC
R:
AATATGCTTGATCTTGCCTGGCT
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]