BtaEX6093434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12035186-12046530:-
Coord C1 exon
chr22:12046410-12046530
Coord A exon
chr22:12045394-12045548
Coord C2 exon
chr22:12035186-12035359
Length
155 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCCCTCCCCCACAGGCT
3' ss Score
11.8
5' ss Seq
CTGGTACCC
5' ss Score
3.61
Exon sequences
Seq C1 exon
CTTCCCGAAGACAGTTACTCTGAGGGGAGCACGGCAGATATGACCAACACTGCTGACCTCCTGGAGCAGATCCCTGACCTCGGAGAGGATGTCAAAGATCCAGAGGACTGCTTCACTGAAG
Seq A exon
GCTGTGTCCGCCGCTGTCCCTGCTGCACCGTGGACACCACACAGGCCCACGGGAAGGTCTGGTGGAGGCTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACGTTCATCATCTTCATGATCCTGCTCAGCAGTGGCGCACTG
Seq C2 exon
GCCTTTGAGGACATCTACCTGGAGGAACGGAAGACCATCAAGGTCCTGCTGGAGTACGCCGACAAGATGTTCACCTACGTCTTCGTGCTGGAGATGCTCCTCAAGTGGGTGGCCTACGGCTTCAAGAAGTACTTCACCAACGCCTGGTGCTGGCTTGATTTCCTCATCGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(15.2=100)
A:
PF065128=Na_trans_assoc=PD(16.7=84.6)
C2:
PF0052026=Ion_trans=PU(17.0=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGCAGATATGACCAACA
R:
AGGAAATCAAGCCAGCACCAG
Band lengths:
257-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]