GgaEX6034638 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47315032-47329644:-
Coord C1 exon
chr4:47329459-47329644
Coord A exon
chr4:47327855-47327948
Coord C2 exon
chr4:47315032-47315595
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTGCCTGTTTTGCAGATG
3' ss Score
9.63
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCTATCAAGCTTGGAGATCATCTCAACAGCATCCTCCTTGGTATGTGTGAAGACGTCATTTATGCCCGAGTATCTGTACGGACCGTTCTGGATGCCTGCAGTGCTCATGTCAGGAACAGTAACTGTGCCCCATCTTTTTCATATGTGAAGCAGTTAGTAAGACTGGTCTTGGGAAGCCTGTCTGGG
Seq A exon
ATGGATCAGCTTTCTTGCAATGGAGATAAAAAATTGCAGCCAGACAGGAGCCAGGCAATTCGGGAGAGGCTGAGGGGAAAAGGACTGCCCACAG
Seq C2 exon
GAAAAGCCTCAGTGGTTGATGCACGTGACGAACACAAGACTAATTTCTCTCAACAGACAATGCTTAACAAAGGGCTTAGCAAGTCGATGGGATTTCTGGCCATGAGAGGAACACAAGGCGAAGAGGAATTTTTCCAGGGCATTTCTTCAGATTACAACTCAGGACAGGAAGATTCTTTCTATCCTTACAGATGTAAAACCAATGAGTTTGAAAACAAAGGTCACCTCCATACAGATGCAGCTCCCAAGCGGAAGGTATGGGCTTCCTCCACAGACTTGCTTTGCACGACCAACAGAGCAACTGAAAGGGACCATGCTTCAGACTCTCACAGGCACAGTCATCAATGTGAGACCTTCGCGGTACGGACTTCTACTATGACCAGAAACAAAGAGGCTAGATACTCCGATGGGAGCATAGCACTGGATATCTTTGGACCTCAGAAAGTGGACCAAACGTGCCACGTGCCTGAGACATCAACTTCTGCAGCAATATCGAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.562 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCTCATGTCAGGAACA
R:
CCATCGACTTGCTAAGCCCTT
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]