BtaEX0028971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014947 | PTPN13
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103409567-103427165:+
Coord C1 exon
chr6:103409567-103409752
Coord A exon
chr6:103415717-103415804
Coord C2 exon
chr6:103426599-103427165
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTACCTGTGTACAGACG
3' ss Score
4.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTATCAAGCTTGGAGATCATCTCAACAGCATCCTACTTGGAATGTGCGAGGATGTGGTTTATGCTCGGGTCTCTGTCCGGACTGTCCTGGATGCTTGCAGTGCCCACATCAGGAATAGCAATTGTGCGCCTTCATTTTCCTACGTGAAGCAGTTGGTAAAACTGGTTCTGGGAAGTCTTTCTGGG
Seq A exon
ACGGATCAGCTTTCCCGTAGCAGCGAGCAAAAGCCTGATCGAAGCCAGGCTATCCGAGACCGATTGAGAGGAAAAGGATTACCAACAG
Seq C2 exon
GAAGAAGCTCTACTTCTGATGTTCTAGACACATACAAGTCTCCATTCTGTCATCAGGCCTTTCTTAACAAAGGGCTTAGTAAATCCATGGGATTTCTATCTATCAAAGATACACGAGATGAGGAAGATTATTTCAAGGACCTTTCATCAGATAATAACTCTGGACAAGAAGATTCGGAAAATTCCTGCTCCCCTTACCCGTTCAAATCTAGTGGCCCAGAAAAAAAAGCTGTCCCTGGCCTCGACGTGCTTCCCAAGAAGAAGATCTGGGCTTCGTCCATGGACTTGCTTTGTACAGGTGACAGAGACTTCTCTTCTGGGGAGACTGACAGATACCAACGCCGTCTCCCTGAGGCGGTTACCGTGCGGACTTCAACCACTCCTAGAAAAAAGGAGGCAAGATACTCAGATGGAAGCCTAGCCTTGGATATCTTCGGGCCTCAGAAAATGGATCCAGCATTTCACACACGAGACTTGCCCACCTCCTCGGCAATATCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947-'7-13,'7-8,8-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.867 C2=0.537
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGTCCGGACTGTCCTG
R:
AGGCCTGATGACAGAATGGAGA
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development