DreEX0059413 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9402695-9416054:-
Coord C1 exon
chr21:9415869-9416054
Coord A exon
chr21:9409540-9409633
Coord C2 exon
chr21:9402695-9403258
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTGTGTGTGTTTAGCTG
3' ss Score
8.56
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCAATGGAACTAGGAGAACACCTGAACAGTGTTCTGCTCAACATGTGTGATGATTCCACACTCACTCGACTGTCCGTTCGCTCGGTTCTGGACACCTGCAGCGCTCACATCCGAACCTCCAACTGTGACCCTTCCTTTTCATACGTCAGGAGGCTTGTGAGGCTCGTTCTTGGAAGTCTTTCTCAG
Seq A exon
CTGGATGGGCTGCTTTCCCAGACAGAAAGGGAGTCAATTCCAGAAAGAAGCAAAGAAATCCGCGAGAGACTTCGAGGAAAAGGGCTTCCTTCAG
Seq C2 exon
GCCGTAGTGCTGCACATCGTGTGCTGGAGCGTTACAGAGCCCGAACACAAGAGCAGGCCAACCTGAACCGTGGACTCAGCCGCTCCATGGGCTCTCTCCCTATGCAGGACCTAATCCACGCCAACGAAGGTCTCACTCCATACCCGCCTCCAGATTATCCCACAGCATCTGAGTTACCTGTCGAACTCTACCACCAACGTCAGCAACAACAACTGCAACAACAGCGTGGTCGACCCATAGAAGTGAACCAGCGCCTGCATCCACACCAGAGGAACAAGAGCTGGGCTTCTTCTGCAGATCTGGCCTGTCTGGACCCAGATATGCTTCGCTTCGGGGCTCTTGAAGACGCCCGCAGGGGTAGCAGTGCCCTGAGCACCCGTTCAGCTGGCAGACACAAGCCCTCTTCTAAAGCCAGAGACTCCCGTTACTCCGAATTTGGAAGTCTGGATGTCAGAAAGACGCACCATCATTCCAATCAATCCGTCGGCTCGGCCTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.812 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTCGACTGTCCGTTC
R:
TTGTGTTCGGGCTCTGTAACG
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]