MmuEX6019192 @ mm9
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103918627-103930931:+
Coord C1 exon
chr5:103918627-103918812
Coord A exon
chr5:103921242-103921329
Coord C2 exon
chr5:103930386-103930931
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTACCTGTGTACAGACG
3' ss Score
4.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCCATCAAGCTGGGAGACCATCTTAATAGCATCCTGCTGGGCATGTGTGAGGATGTCATCTATGCTCGGGTGTCGGTTCGGACCGTCCTGGATGCTTGCAGTGCCCACATCAGGAACAGCAACTGCGCGCCTTCGTTTTCCTATGTGAAACAGTTGGTAAAGCTGGTTCTGGGCAATATTTCTGGG
Seq A exon
ACGGATCCACTTTCCCGTAGCAGTGAACAAAAACCTGACCGGAGCCAGGCCATTCGAGACCGACTGAGAGGAAAAGGATTGCCCACAG
Seq C2 exon
GAAGAAGCTCCACTTCAGACGCACTAGACACACACGAGGCTCCACTCTCTCAGCAGACCTTTCTTAACAAAGGGCTTAGTAAGTCTATGGGATTTCTGTCCATCAGAGACACACGAGATGAGGAAGACTATCTCAAGGATACTCCATCTGATAATAATTCCAGGCATGAAGATTCTGAGACTTTCTCTTCCCCTTACCAGTTCAAAACTAGTACTCCACAGATGGATGCACTCTCCAAGAAGAAGACATGGGCTTCCTCCATGGACTTGCTCTGTGCAGCTAACAGAGACATTTCTGGAGAGACGGGCAGGTACCAACGCTGTGACCCTGAGACAGTGACAGGACGGACGTCCATCACTCCTAGAAAAAAAGAAGGAAGGTACTCTGATGGAAGCATTGCCTTGGATATCTTTGGCCCTCAGAAGGTGGAGCCGGTGATCCACACCCGAGAACTGCCGACCTCCACCGCGGTATCAAGCGCTTTGGACCGAATTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'7-9,'7-6,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.887 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCATGTGTGAGGATGTC
R:
TAGTGCGTCTGAAGTGGAGCT
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: