RnoEX0071166 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7782502-7798366:-
Coord C1 exon
chr14:7798181-7798366
Coord A exon
chr14:7796209-7796296
Coord C2 exon
chr14:7782502-7783047
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGATCACCTGTGCACAGACG
3' ss Score
5.31
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CCCATCAAGCTGGGAGACCATCTCAACAGCATTCTGCTGGGCATGTGCGAGGATGTTCTTTATGCTCGGGTGTCCGTCCGGACCGTGCTGGACGCCTGCAGCGCCCACATCAGGAACAGCAACTGTGCGCCCTCCTTTTCCTATGTGAAGCAGTTGGTAAAGCTGGTTCTGGGAAATATTTCTGGG
Seq A exon
ACGGATCCGCTTTCCCATAGCAGTGAAGAAAAGCCTGACCGGAGCCAGGCCATCCGAGACCGACTGAGAGGAAAAGGATTACCCATAG
Seq C2 exon
GAAGAAGCTCCACTTCTGACGCACTAGACACACACAAGGCTCCACTCTCTCAGCAGACCTTTCTTAACAAAGGGCTTAGTAAATCTATGGGATTTCTGTCCGTCAGAGACACACAAGAGGAGGAAGATTATTCCAAGGAAATTCCCTCCGATAATAATTCCAGGCATGAAGACTCTGAGCCTTTCTCCTCCCCTTACCAGTTCAAAACTAGTAGTCCACACATTGACGTACTCTCTAAGAAGAAGACCTGGGCTTCGTCCATGGACTTGCTCTGTGCGGCCGACAGAGACCTTTCTGGAGAGATTGGAAGGTACCAACACTGTGACCCTGAGACAGGGACGGGACGGACGTCGATCACTTCTAGGAAGAAAGAAGGACGGTACTCTGACGGAAGCATTGCCTTGGATGTCTTCGGCCCTCAGAAAGCAGAGCCAGTGATCCACAGCCGAGAACTGCCGGCTTCCTCCGCTGTTTCGAGCGCTTTGGACCGAATTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'7-11,'7-6,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.933 C2=0.607
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGTGCGAGGATGTTCTT
R:
TAGTGCGTCAGAAGTGGAGCT
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]