MmuEX6019192 @ mm10
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103489608-103501912:+
Coord C1 exon
chr5:103489608-103489793
Coord A exon
chr5:103492223-103492310
Coord C2 exon
chr5:103501367-103501912
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTACCTGTGTACAGACG
3' ss Score
4.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCCATCAAGCTGGGAGACCATCTTAATAGCATCCTGCTGGGCATGTGTGAGGATGTCATCTATGCTCGGGTGTCGGTTCGGACCGTCCTGGATGCTTGCAGTGCCCACATCAGGAACAGCAACTGCGCGCCTTCGTTTTCCTATGTGAAACAGTTGGTAAAGCTGGTTCTGGGCAATATTTCTGGG
Seq A exon
ACGGATCCACTTTCCCGTAGCAGTGAACAAAAACCTGACCGGAGCCAGGCCATTCGAGACCGACTGAGAGGAAAAGGATTGCCCACAG
Seq C2 exon
GAAGAAGCTCCACTTCAGACGCACTAGACACACACGAGGCTCCACTCTCTCAGCAGACCTTTCTTAACAAAGGGCTTAGTAAGTCTATGGGATTTCTGTCCATCAGAGACACACGAGATGAGGAAGACTATCTCAAGGATACTCCATCTGATAATAATTCCAGGCATGAAGATTCTGAGACTTTCTCTTCCCCTTACCAGTTCAAAACTAGTACTCCACAGATGGATGCACTCTCCAAGAAGAAGACATGGGCTTCCTCCATGGACTTGCTCTGTGCAGCTAACAGAGACATTTCTGGAGAGACGGGCAGGTACCAACGCTGTGACCCTGAGACAGTGACAGGACGGACGTCCATCACTCCTAGAAAAAAAGAAGGAAGGTACTCTGATGGAAGCATTGCCTTGGATATCTTTGGCCCTCAGAAGGTGGAGCCGGTGATCCACACCCGAGAACTGCCGACCTCCACCGCGGTATCAAGCGCTTTGGACCGAATTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'7-10,'7-6,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.900 C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCATGTGTGAGGATGTC
R:
TAGTGCGTCTGAAGTGGAGCT
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types