GgaEX6046908 @ galGal3
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
NA
Coordinates
chrE22C19W28_E50C23:63519-65344:-
Coord C1 exon
chrE22C19W28_E50C23:64874-65344
Coord A exon
chrE22C19W28_E50C23:64350-64467
Coord C2 exon
chrE22C19W28_E50C23:63519-63673
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGTTTTATTTTGTGTTCAAGAAA
3' ss Score
4.43
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GTGCTGAACCTGTTCCTGGCTTTGCTGCTGAGCTCCTTCAGTGCAGACAACCTGGCAGCAACGGATGACGATGGGGAGATGAACAACCTGCAGATCTCTGTCATTCGCATCAAGAAGGGCATTGCCTGGACCAAGGCGAAAGTGCGTGAATTCATGCAGGCTCACTTCAAGCAGAGAGAGGCAGATGAGGTCAAACCCTTGGACGAGCTGTATGACAAGAAGGTGAACTGCATTGCCAACCACACGGGGGCTGATATCCACAGAGACATCGATTATCAGAAGAACGGCAATGGCACAACCAGTGGAATTGGGAGCAGCGTGGAGAAATACATCATCGATGAAGACCACATGTCCTTCATCAACAACCCCAACCTCACCGTCCGGGTGCCTATTGCTGTCGGGGAGTCAGACTTTGAAAATCTCAACACAGAAGATTTCAGCAGCGATACAGACCCTGATGGCAGCAAAGAG
Seq A exon
AAACTGGATGATACCAGCTCCTCCGAAGGCAGCACCATTGATATAAAGCCTGAAGTGGAAGAAGTCCCTGTGGAGGCACCAGAAGAGTATCTGGACCCGGATGCATGCTTCACTGAGG
Seq C2 exon
GTTGCATGCAGCGCTGTAAGTGTTGTCAGGTCAATATTGAGGAGGGGCTGGGGAAGTCCTGGTGGACCTTGAGGAAGACGTGTTTTCTGATTGTGGAGCACAACTGGTTTGAGACTTTCATCATCTTCATGATCCTACTGAGCAGTGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.550 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(61.0=84.7)
A:
PF065128=Na_trans_assoc=FE(17.9=100)
C2:
PF065128=Na_trans_assoc=PD(20.2=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGCGTGGAGAAATAC
R:
ACACGTCTTCCTCAAGGTCCA
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]