GgaEX7006010 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:19014330-19017417:+
Coord C1 exon
chr7:19014330-19014710
Coord A exon
chr7:19016102-19016234
Coord C2 exon
chr7:19017179-19017417
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTGTTTCATAGAGT
3' ss Score
9.43
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TCTTTACTAAGCATTCGTGGCTCCCTGTTTTCTCCCAGACGTAGTAGCAGAACAAGTCTTTTCAGTTTTAGAGATCATGGAAAAGAGATAGGATCTGAAAATGACTTTGCTGATGATGAACACAGCACATTTGATGATAATGGAAGCAGAAGAGGTTCTCTTTTTGTACCACTGCGACACAGTGAACGGCGTGGTAGTAACATTAGTCAGGCTAGCAGACCGTCAAGAAGGCTGACACTGTTTCCAGTGAATGGGAAGATGCATAGCACTGTGGATTGCAATGGAGTGGTTTCTTTAGTGGATAGACCTCCATGTCTCTTGTCACCTACAGGGCAGCTGCTGCCAGAGTTGATAATAGACAAACCAACAACTGATGATAAT
Seq A exon
AGTACTACTACAGAAATGGAAATAAAAAAGAGACGTTCAAGCTCATATCAAATACCAATGGATTTGCTGGAGGATCCCAATCTAAGACAGAGAGCCATGAGTATAGCTGGCATTATCACAAATACAATGGAAG
Seq C2 exon
AACTTGAAGAATCCAGACAGAAATGTCCACCCTGCTGGTACAAGTTTGCCCACACATACTTAATTTGGAATTGTTGTGAGGTCTGGTTAAAAGTGAAGAGTGTAGTTTCATTTATTGTAATGGACCCACTTGTTGATCTGGCTATCACTATTTGCATAATTTTAAACACACTGTTTATGGCCATGGAGCATTATCCAATGACGGAGACTTTTAACAATACACTTAAAGTAGGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.244 C2=0.000
Domain overlap (PFAM):
C1:
PF0310514=SPX=PD(38.7=67.7),PF119333=DUF3451=FE(53.4=100)
A:
PF119333=DUF3451=PD(15.3=80.0)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGCGTGGTAGTAACA
R:
TGGGCAAACTTGTACCAGCAG
Band lengths:
252-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]