GgaEX7011852 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:96968-98764:-
Coord C1 exon
chrLGE22C19W28_E50C23:98558-98764
Coord A exon
chrLGE22C19W28_E50C23:98080-98367
Coord C2 exon
chrLGE22C19W28_E50C23:96968-97327
Length
288 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCCATTCTCCTTCAGGCT
3' ss Score
9.85
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
ACCTTACGAGCAGCTGGAAAAACCTACATGATCTTCTTTGTCCTGGTGATCTTCGTGGGCTCGTTCTATCTGGTCAACCTGATTCTGGCTGTGGTGGCCATGGCTTACGAAGAGCAGAACCAGGCTACGTTGGAGGAGGCAGAGCAGAAAGAGGCCGAATTTAAGGCCATGTTAGAACAGTTGAAAAAGCAGCAGGAGGAGGCACAG
Seq A exon
GCTGCTGCCATGGTCACTTCTGCAGGGACGGTCTCTGAGGATGCTGTGGAAGATGATGGTGGTGGGAGGATGTCTCGGAGCTCATCAGAGATCTCTAAACTGAGTTCCAAGAGTGCCAAAGAGCGCCGTAACCGGAGGAAGAAGCGGAAGGACAAAGAGCTGTCGGAAGGGGAGGAGAAGGGCGACAACGAGAAAGTGTTCAAGTCTGAATCAGAGGATGGCATGAGGAGAAAAGCCTTCAGGCTGCCAGATAACAGGATAGGAAGAAAGTTTTCCATCATGAACCAG
Seq C2 exon
TCTCTCCTCAGCATCCCGGGCTCCCCTTTCCTCTCCCGACACAACAGCAAGAGCAGCATCTTCAGCTACAAGGGCCGATTCCGCGACCCGGGCTCGGAGAACGAATTCGCCGACGACGAACACAGCACGGTGGAGGAGAGCGAAGGCCGCAGGGATTCCCTCTTCATCCCCATCCGCGGCCGCGACCGACGGAGCAGCTACAGCGGATACAGCGGCTACAGCCAGGGCAGCCGCTCCTCGCGGATATTCCCCAACCTCCGCCGCAACATCAAGAGGAACAGCACGGTGGATTGCAACGGCGTCGTGTCCCTCATCGGCGGCCCGCCTTCCAGCATGCCCGGCGGGCGCCTTCTGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.812 C2=0.500
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.4=44.9)
A:
PF119333=DUF3451=PU(29.8=69.8)
C2:
PF119333=DUF3451=FE(52.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGATTCTGGCTGTGGTG
R:
TGGGGATGAAGAGGGAATCCC
Band lengths:
304-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]