GgaEX7011862 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:78099-79800:-
Coord C1 exon
chrLGE22C19W28_E50C23:79663-79800
Coord A exon
chrLGE22C19W28_E50C23:78916-79020
Coord C2 exon
chrLGE22C19W28_E50C23:78099-78369
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTGCCCCTTTACTTT
3' ss Score
2.21
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CAAGAAGAGCAACCCAAGTACGAGGACAACATCTACATGTACATATATTTTGTTATCTTCATCATCTTTGGCTCCTTTTTCACTCTGAACTTGTTCATCGGTGTCATCATTGACAACTTCAATCAACAAAAGAAAAAG
Seq A exon
TTTGGAGGTCAAGATATTTTCATGACAGAAGAACAAAAGAAATACTACAATGCCATGAAAAAACTGGGCTCCAAGAAGCCTCAAAAGCCAATTCCCCGGCCTCTG
Seq C2 exon
AACCGCATTCAGGGAGCTGTCTTTGACTTTGTCACTCAGCAAGCATTCGACATCGTCATCATGATGCTCATCTGCCTCAACATGGTGACCATGATGGTGGAGACGGACACACAGAGCAAGCAGATGGAGGACATCCTCTACTGGATCAACCTGGTGTTCGTCATCTTCTTCACCTGCGAGTGTGTGCTGAAGATGTTCGCCTTGCGGCACTACTACTTCACCATTGGGTGGAACATCTTTGACTTCGTTGTTGTGATTCTGTCCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'34-30,'34-29,35-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.2=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.5=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAACCCAAGTACGAGGA
R:
CTTGCTCTGTGTGTCCGTCTC
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]