RnoEX6034126 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142675149-142678550:+
Coord C1 exon
chr7:142675149-142675286
Coord A exon
chr7:142676400-142676504
Coord C2 exon
chr7:142678280-142678550
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTGTTCTCTCTCTACTTT
3' ss Score
3.19
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
CCAGACGAGCAGCCTGACTACGAGGGCAACATCTACATGTACATCTACTTCGTCATCTTCATCATCTTCGGCTCCTTCTTCACCCTCAACCTGTTCATCGGTGTCATCATCGACAACTTCAACCAGCAGAAGAAAAAG
Seq A exon
TTTGGAGGTCAGGACATCTTCATGACAGAGGAACAGAAGAAGTACTACAATGCCATGAAAAAGCTGGGCTCCAAGAAGCCACAGAAGCCCATCCCCCGACCCTTG
Seq C2 exon
AACAAAATCCAAGGGATTGTCTTTGATTTCGTCACTCAACAAGCCTTTGACATTGTGATCATGATGCTCATCTGCCTTAACATGGTGACAATGATGGTGGAGACAGACACTCAGAGCAAGCAGATGGAGAACATTCTTTACTGGATTAATCTGGTCTTTGTCATCTTCTTCACCTGCGAGTGTGTGCTCAAAATGTTTGCCTTGAGACACTACTATTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTGGTCATCCTCTCCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'53-49,'53-48,54-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.2=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.5=47.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAACCTGTTCATCGGTG
R:
CACACACTCGCAGGTGAAGAA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]