GgaINT0054924 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27835109-27835192:+
Coord C1 exon
chr5:27835109-27835159
Coord A exon
chr5:27835160-27835188
Coord C2 exon
chr5:27835189-27835192
Length
29 bp
Sequences
Splice sites
5' ss Seq
CCTGTCCTC
5' ss Score
-21.47
3' ss Seq
TGTGTGGGAACAGAAGGGAGGAG
3' ss Score
-22.78
Exon sequences
Seq C1 exon
GGAGGTTGAAAACATGATTGAGGCAGATCGCCCATCGGTGAGTACCATCCT
Seq A exon
GTCCTCTTCTGTGTGGGAACAGAAGGGAG
Seq C2 exon
GAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]