HsaEX0057655 @ hg19
Exon Skipping
Gene
ENSG00000156304 | SFRS15
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304]
Coordinates
chr21:33064662-33066602:-
Coord C1 exon
chr21:33066517-33066602
Coord A exon
chr21:33065607-33065797
Coord C2 exon
chr21:33064662-33064762
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTGAAAACATTAGGTC
3' ss Score
4.15
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
GAAATGGAAGTAGAACAACCTTGTATTCAAGAGGTTAAGCGACATATGTCTGATAACAGAAAGTCAAGATCTAGGTCAGCATCCAG
Seq A exon
GTCACCAAAAAGGAGGCGATCTAGATCTGGTTCTAGATCTCGAAGGTCTCGGCATCGACGTTCTCGATCTCGGTCCAGGGATAGACGCCGACATTCTCCCCGATCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGAGAACGTCGACAAAAAGGCCTCCCTCAAGTGAAACCGGAAACTGCAAGTG
Seq C2 exon
TTTGCAGTACTACCCTCTGGGTGGGGCAGCTGGACAAAAGAACTACTCAGCAGGATGTTGCCAGTCTCTTGGAAGAGTTTGGTCCAATTGAATCAATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-'15-18,'15-16,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.059
Domain overlap (PFAM):
C1:
PF086487=DUF1777=FE(22.6=100)
A:
PF086487=DUF1777=FE(51.6=100)
C2:
PF086487=DUF1777=PD(19.4=70.6),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAAGTAGAACAACCTTGT
R:
TTCAATTGGACCAAACTCTTCCA
Band lengths:
178-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)