DreEX6088270 @ danRer10
Exon Skipping
Gene
ENSDARG00000077093 | scaf4a
Description
SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
Coordinates
chr10:25744637-25747477:-
Coord C1 exon
chr10:25747401-25747477
Coord A exon
chr10:25746488-25746672
Coord C2 exon
chr10:25744637-25744737
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGGGGATGTTGTTTTTTCAGGTC
3' ss Score
8.46
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAAAGTCTGATGAATTCAGATGCATCTGCGAGGTCTGCCCATGAAGACAAGAGGTCAAGGTCACGCTCGGGGTCGAG
Seq A exon
GTCTCCTAAAAGAAGAAGGTCTCGATCCAATTCCCGGTCCAGACGAATGAGGCATCGACGATCTCGGTCTCGAGAACGGCGGCGTCAGTCACCTCGCTCGCGCTCTCAGGAAAGGAGAGACAGAGAAAAGGAAAGAGAACGAAGACAGAAAGGCCTCCCTCCTGTTAAAAATAACACACTCAGTG
Seq C2 exon
TGTGCAGCACAACTCTATGGGTGGGTCAGCTGGATAAGAGGACACAGCAGCAGGACGTGGCCTCTATACTAGAGGAGTTTGGCCAGATAGATTCAATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077093-'15-19,'15-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.921 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCATCTGCGAGGTCTG
R:
ATTAATTGAATCTATCTGGCCAAACT
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]