GgaEX6004209 @ galGal4
Exon Skipping
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104006656-104009773:-
Coord C1 exon
chr1:104009688-104009773
Coord A exon
chr1:104008641-104008831
Coord C2 exon
chr1:104006656-104006756
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTGGTTTAAACTAGGTC
3' ss Score
8.2
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AACATGGAAGTGGAACAGCCACCTATTCAAGAAAGAAAACGACATGTTTCTGACAACAGAAAGTCAAGATCTAGATCTGCATCAAG
Seq A exon
GTCACCTAAAAGGAGACGTTCAAGGTCCGGCTCTCGCTCTCGAAGGTCACGTCATCGTCGATCTCGGTCACGATCCAGGGATAGACGCCGCCACTCTCCGAAGTCTCGATCACAGGAAAGACGTGAACGTGAGAGGGAGAGAGAACGCAGGTCAAAAGGCCTTCCTCAGATCAAATCAGAAACTGTTAGTG
Seq C2 exon
TTTGTAGTACTACGCTTTGGGTAGGACAACTTGACAAAAGGACTACACAGCAGGATGTTGGAAGTCTCTTGGAGGAGTTTGGCCCAATAGAATCAATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'17-25,'17-23,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGAAGTGGAACAGCCA
R:
TTTATTGATTCTATTGGGCCAAACT
Band lengths:
186-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]