MmuEX6063303 @ mm10
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90247645-90249712:-
Coord C1 exon
chr16:90249627-90249712
Coord A exon
chr16:90248513-90248703
Coord C2 exon
chr16:90247645-90247745
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCTTATTGGAAATGTATTAGGTC
3' ss Score
2.52
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GAAATGGAAGTAGAGCAGCCTTGTGTTACAGAGGTTAAGCGGCATGTGCCCGAGAGCAGAAAGTCGAGATCCAGGTCAGCATCCAG
Seq A exon
GTCACCAAAAAGGAGAAGATCTAGGTCTGGCTCTAGGTCTCGGAGATCCCGCCACCGTCGCTCTCGGTCTCGGTCCAGGGACAGGCGCCGACACTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAACGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTG
Seq C2 exon
TTTGTAGTACCACACTGTGGGTGGGACAACTGGACAAAAGGACTACTCAGCAGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCGATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-'20-20,'20-19,22-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAAGTAGAGCAGCCTTGT
R:
TTAATCGATTCAATTGGACCAAACT
Band lengths:
186-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types