RnoEX6056499 @ rn6
Exon Skipping
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30391133-30395350:-
Coord C1 exon
chr11:30395160-30395350
Coord A exon
chr11:30391935-30392125
Coord C2 exon
chr11:30391133-30391267
Length
191 bp
Sequences
Splice sites
3' ss Seq
CATCTTTGGAAATATATTAGGTC
3' ss Score
3.43
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
TGGGTACCCTGGAGACGGCATGCAGCAGCCAGCGTACACACAGCATCAAAATGTGGACCAGTTTCAACCTCGAATGATGGCACTGCAGCAGGATAGCATGCAGCATCAGGTATGGGCATTTTCTTGGATTGACCTTGTACTTCTGAGCACTGCTGTGACTACAGAATCTGCTAAGGAGAGCAGCAGCTCCA
Seq A exon
GTCACCAAAAAGAAGAAGATCTAGGTCTGGCTCTAGGTCTCGGAGATCCCGCCACCGTCGGTCTCGGTCCCGGTCCAGGGATAGGCGCCGGCACTCGCCTCGCTCTCGCTCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAGCGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAGACTGCAAGTG
Seq C2 exon
TGCTGCTGGATTGTAACCACTGATTTACTTTCAGTTTGCAGCACCACACTGTGGGTGGGACAGCTGGACAAAAGGACTACTCAGCAGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCAATTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104-'18-20,'18-19,24-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=0.636 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGTACACACAGCATCAA
R:
GCAACATCCTGCTGAGTAGTCC
Band lengths:
258-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]