BtaEX6000181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018855 | SCAF4
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr1:3087660-3091434:+
Coord C1 exon
chr1:3087660-3087748
Coord A exon
chr1:3088438-3088628
Coord C2 exon
chr1:3091334-3091434
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCTGAAAATATTAGGTC
3' ss Score
5.07
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAGGAAATGGAAGTAGAACAACCTTGTATTCAAGAGCCTAAGCGGCACATATCTGATCACAGAAAGTCAAGATCTAGATCAGCATCCAG
Seq A exon
GTCACCGAAAAGGAGACGATCTCGATCTGGTTCTAGATCTCGAAGGTCTCGGCATCGACGTTCTCGATCTAGGTCCAGAGATAGACGCCGACATTCTCCTCGGTCTCGATCCCAAGAAAGACGAGATCGAGAAAAGGAAAGAGAACGCCGACAGAAAGGCCTTCCTCAGATCAAAGCAGAAACCGCAAGTG
Seq C2 exon
TTTGTAGTACTACACTCTGGGTGGGACAGCTGGACAAAAGGACTACTCAGCAGGATGTTGCCAGTCTTTTAGAAGAGTTTGGTCCAATTGAATCAATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018855-'11-18,'11-17,12-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATGGAAGTAGAACAACCTTGT
R:
AATTGATTCAATTGGACCAAACTCT
Band lengths:
186-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]