HsaEX0057655 @ hg38
Exon Skipping
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31692349-31694289:-
Coord C1 exon
chr21:31694204-31694289
Coord A exon
chr21:31693294-31693484
Coord C2 exon
chr21:31692349-31692449
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTGAAAACATTAGGTC
3' ss Score
4.15
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
GAAATGGAAGTAGAACAACCTTGTATTCAAGAGGTTAAGCGACATATGTCTGATAACAGAAAGTCAAGATCTAGGTCAGCATCCAG
Seq A exon
GTCACCAAAAAGGAGGCGATCTAGATCTGGTTCTAGATCTCGAAGGTCTCGGCATCGACGTTCTCGATCTCGGTCCAGGGATAGACGCCGACATTCTCCCCGATCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGAGAACGTCGACAAAAAGGCCTCCCTCAAGTGAAACCGGAAACTGCAAGTG
Seq C2 exon
TTTGCAGTACTACCCTCTGGGTGGGGCAGCTGGACAAAAGAACTACTCAGCAGGATGTTGCCAGTCTCTTGGAAGAGTTTGGTCCAATTGAATCAATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-'19-26,'19-24,20-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAAGTAGAACAACCTTGT
R:
TTCAATTGGACCAAACTCTTCCA
Band lengths:
178-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development