HsaEX6012724 @ hg19
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30980912-30987172:-
Coord C1 exon
chr2:30986998-30987172
Coord A exon
chr2:30985948-30986022
Coord C2 exon
chr2:30980912-30981003
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTCTGCCTTGAAGCCA
3' ss Score
7.09
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTGCTCGGATCCTATTCCGATCTGCACTATGGCTTCCTCGAGGATGCCCTGGTGGACCTCACAGGAGGCGTGATCACCAACATCCATCTGCACTCTTCCCCTGTGGACCTGGTGAAGGCAGTGAAGACAGCGACCAAGGCAGGCTCCCTGATAACCTGTGCCACTCCAAGTGGG
Seq A exon
CCAACAGATACAGCACAGGCGATGGAGAATGGGCTGGTGAGTCTCCATGCCTACACTGTGACTGGGGCTGAGCAG
Seq C2 exon
ATTCAATACCGAAGGGGCTGGGAAGAAATTATCTCCCTGTGGAACCCCTGGGGCTGGGGCGAGGCCGAATGGAGAGGGCGCTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.097
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.4=100)
A:
PF0064816=Peptidase_C2=FE(8.0=100)
C2:
PF0064816=Peptidase_C2=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTATGGCTTCCTCGAG
R:
AATTTCTTCCCAGCCCCTTCG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)