MmuEX6079234 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73345139-73351553:-
Coord C1 exon
chr17:73351379-73351553
Coord A exon
chr17:73350476-73350550
Coord C2 exon
chr17:73345139-73345224
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTACCTTTCTGCAGCTG
3' ss Score
10.15
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCTACTTGGCTCCTATTCCCAATTACACTATGGCTACCTTCCTGATGCCCTGGTGGACCTCACAGGAGGAGTGGTCACCATCATCAACCTGCACTCCTCTCCATTTGACCTACTGACGACAGTGAAGACCGCAATCCAAGCAGGCTCAATGGTGGCCTGTGCCACCGAAAATGGG
Seq A exon
CTGACAGAAGAGGCCAAAGTGATGGAGAATGGACTGGTGAGCCAGCACGCATACACAGTGACTGGAGCTGAGAAG
Seq C2 exon
ATTCAGTACCAGGGGCGTTGGGAAGACATCATCCGCCTTTGGAACCCCTGGGGCAAGACAGAATGGAAAGGACGCTGGAAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'8-12,'8-9,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.3=100)
A:
PF0064816=Peptidase_C2=FE(8.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCTGCACTCCTCTCCAT
R:
CCAGCGTCCTTTCCATTCTGT
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types