RnoEX6027758 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24615413-24621141:-
Coord C1 exon
chr6:24620967-24621141
Coord A exon
chr6:24620098-24620172
Coord C2 exon
chr6:24615413-24615498
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTCCTTTCTGCAGCTG
3' ss Score
11.74
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCCTGATGCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCTGACCTATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAAAGTGG
Seq A exon
CTGACAGAAGAGTCCGAGGTTATGGAGAATGGGCTGGTGAGCCAGCATGCATACACAGTGACTGGAGCTGAGAAG
Seq C2 exon
ATTCAGTACCGGAGGGGCTGGGAAGAAATCATCCGCCTTTGGAACCCCTGGGGCAACACAGAATGGAGAGGCCGCTGGGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.5=100)
A:
PF0064816=Peptidase_C2=FE(8.1=100)
C2:
PF0064816=Peptidase_C2=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTGGTCACCAGGATCA
R:
CTCTCCATTCTGTGTTGCCCC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]