GgaEX6028716 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7763327-7765252:+
Coord C1 exon
chr3:7763327-7763501
Coord A exon
chr3:7764461-7764529
Coord C2 exon
chr3:7765167-7765252
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCACTCTTTTGCAGATG
3' ss Score
12.42
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGCAGGGCTCCTACCAGAACTTGCACGGGGGCTACATTTCTGATGCTTTAGTAGACTTCACAGGTGGAGTCCAAATGCAGTTCTCACTAAAGGACCCCCCTCCTGATCTGGAGGACGTGCTGAAAGCAGCTAGCAAATCTCGGTGTCTGATGGGATGCAGCACCTCGGGCTGG
Seq A exon
ATGAGGAACACAGTATTAAGGAATGGGATTGTGCAAGGTCATGCGTACACTGTCACAGGAGCCGTGAAG
Seq C2 exon
ATACGATTCAAGAACCAGTGGGAACATATCATCAGAGTCTGGAATCCATGGGGCCATGGGGAGTGGAGGGGGCCCTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.7=100)
A:
PF0064816=Peptidase_C2=FE(7.5=100)
C2:
PF0064816=Peptidase_C2=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGTGGAGTCCAAATGCA
R:
GCCCCATGGATTCCAGACTCT
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]