BtaEX6044982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69094573-69102232:+
Coord C1 exon
chr11:69094573-69094747
Coord A exon
chr11:69095693-69095767
Coord C2 exon
chr11:69102147-69102232
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCCCTCCTTTGAAGCCC
3' ss Score
8.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTCATGGGTCCTATGCCAACCTGCACTATGGCTACCTCCCCGATGCCCTGGTGGACCTCACGGGAGGGGTGGTCACCAACATCAGCCTGCACTCATCCTCGTCTGACCTGATGACGATGGTGAAGACAGCCGCGGAGGCAGGCTCTCTGATGACCTGCAGCACCCTGGCCGGG
Seq A exon
CCCACAAGCGAGTCCGTGACGATGGCAAATGGACTGGTGAGCCGGCACGCCTACACGGTGACTGGCGCTGAGCAG
Seq C2 exon
ATTGAGTACAGGAGGAGCTGGGAGTATCTTATCCGCCTGTGGAACCCCTGGGGCAAGATCGAATGGAGAGGGCGCTGGAGCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.4=100)
A:
PF0064816=Peptidase_C2=FE(8.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATCAGCCTGCACTCAT
R:
CGCCCTCTCCATTCGATCTTG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]